{
  "_id": "6a1060ecacfb0bcc41ca7725",
  "Package": "personalized",
  "Type": "Package",
  "Title": "Estimation and Validation Methods for Subgroup Identification\nand Personalized Medicine",
  "Version": "0.2.8",
  "Authors@R": "c(\nperson(\"Jared\", \"Huling\",  role = c(\"aut\", \"cre\"), email = \"jaredhuling@gmail.com\",\ncomment = c(ORCID = \"0000-0003-0670-4845\")),\nperson(\"Aaron\", \"Potvien\", role = \"ctb\"),\nperson(\"Alexandros\", \"Karatzoglou\", role = \"cph\"),\nperson(\"Alex\", \"Smola\", role = \"cph\")\n)",
  "Description": "Provides functions for fitting and validation of models\nfor subgroup identification and personalized medicine /\nprecision medicine under the general subgroup identification\nframework of Chen et al. (2017) <doi:10.1111/biom.12676>. This\npackage is intended for use for both randomized controlled\ntrials and observational studies and is described in detail in\nHuling and Yu (2021) <doi:10.18637/jss.v098.i05>.",
  "URL": "https://jaredhuling.org/personalized/,\nhttps://arxiv.org/abs/1809.07905",
  "BugReports": "https://github.com/jaredhuling/personalized/issues",
  "License": "GPL-2",
  "Encoding": "UTF-8",
  "LazyData": "true",
  "RoxygenNote": "7.3.3",
  "VignetteBuilder": "knitr",
  "Config/pak/sysreqs": "cmake make libicu-dev libuv1-dev libssl-dev",
  "Repository": "https://jaredhuling.r-universe.dev",
  "Date/Publication": "2026-01-08 16:40:59 UTC",
  "RemoteUrl": "https://github.com/jaredhuling/personalized",
  "RemoteRef": "HEAD",
  "RemoteSha": "da31260c36bc6df72a5f13675dd9b04c4c018839",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-08 08:17:27 UTC",
    "User": "root"
  },
  "Author": "Jared Huling [aut, cre] (ORCID:\n<https://orcid.org/0000-0003-0670-4845>),\nAaron Potvien [ctb],\nAlexandros Karatzoglou [cph],\nAlex Smola [cph]",
  "Maintainer": "Jared Huling <jaredhuling@gmail.com>",
  "MD5sum": "b99bc787bfb0cd218f11f63de63a13cf",
  "_user": "jaredhuling",
  "_type": "src",
  "_file": "personalized_0.2.8.tar.gz",
  "_fileid": "06a4c574747a5db5f281c7313acc808483e69fb69122a94c013198d16407957a",
  "_filesize": 1830673,
  "_sha256": "06a4c574747a5db5f281c7313acc808483e69fb69122a94c013198d16407957a",
  "_created": "2026-05-08T08:17:27.000Z",
  "_published": "2026-05-22T13:58:04.124Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 77394432247,
      "time": 255,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "6874919907"
    },
    {
      "job": 77394432237,
      "time": 257,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "6874923341"
    },
    {
      "job": 77394431976,
      "time": 158,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "6874894496"
    },
    {
      "job": 77394432159,
      "time": 161,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "6874895532"
    },
    {
      "job": 77394431638,
      "time": 245,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "6874852284"
    },
    {
      "job": 77394431293,
      "time": 124,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7162293213"
    },
    {
      "job": 77394432109,
      "time": 313,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "6874938289"
    },
    {
      "job": 77394432121,
      "time": 252,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "6874918789"
    },
    {
      "job": 77394432115,
      "time": 290,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "6874929717"
    }
  ],
  "_buildurl": "https://github.com/r-universe/jaredhuling/actions/runs/25544871177",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/jaredhuling/personalized",
  "_commit": {
    "id": "da31260c36bc6df72a5f13675dd9b04c4c018839",
    "author": "Jared Huling <jaredhuling@gmail.com>",
    "committer": "Jared Huling <jaredhuling@gmail.com>",
    "message": "site update\n",
    "time": 1767890459
  },
  "_maintainer": {
    "name": "Jared Huling",
    "email": "jaredhuling@gmail.com",
    "login": "jaredhuling",
    "uuid": 3196112,
    "orcid": "0000-0003-0670-4845"
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "glmnet",
      "version": ">= 2.0-13",
      "role": "Depends"
    },
    {
      "package": "mgcv",
      "role": "Depends"
    },
    {
      "package": "ggplot2",
      "role": "Depends"
    },
    {
      "package": "plotly",
      "role": "Depends"
    },
    {
      "package": "survival",
      "role": "Imports"
    },
    {
      "package": "methods",
      "role": "Imports"
    },
    {
      "package": "kernlab",
      "role": "Imports"
    },
    {
      "package": "foreach",
      "role": "Imports"
    },
    {
      "package": "xgboost",
      "version": ">= 3.1.2.1",
      "role": "Imports"
    },
    {
      "package": "data.table",
      "version": ">= 1.9.6",
      "role": "Imports"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "role": "Suggests"
    },
    {
      "package": "nnet",
      "role": "Suggests"
    }
  ],
  "_owner": "jaredhuling",
  "_selfowned": true,
  "_usedby": 1,
  "_updates": [
    {
      "week": "2025-51",
      "n": 4
    },
    {
      "week": "2025-52",
      "n": 5
    },
    {
      "week": "2026-02",
      "n": 3
    }
  ],
  "_tags": [
    {
      "name": "v0.2.8",
      "date": "2026-01-08"
    }
  ],
  "_topics": [
    "causal-inference",
    "heterogeneity-of-treatment-effect",
    "individualized-treatment-rules",
    "personalized-medicine",
    "precision-medicine",
    "subgroup-identification",
    "treatment-effects",
    "treatment-scoring"
  ],
  "_stars": 33,
  "_contributors": [
    {
      "user": "jaredhuling",
      "count": 600,
      "uuid": 3196112
    },
    {
      "user": "aaronpotvien",
      "count": 30,
      "uuid": 30506342
    }
  ],
  "_userbio": {
    "uuid": 3196112,
    "type": "user",
    "name": "Jared Huling",
    "description": "Assistant Professor in the Division of Biostatistics at the University of Minnesota"
  },
  "_downloads": {
    "count": 641,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/personalized"
  },
  "_devurl": "https://github.com/jaredhuling/personalized",
  "_pkgdown": "https://jaredhuling.org/personalized/",
  "_searchresults": 126,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/personalized.html",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/jaredhuling/personalized",
  "_realowner": "jaredhuling",
  "_cranurl": true,
  "_releases": [
    {
      "version": "0.0.2",
      "date": "2017-06-11"
    },
    {
      "version": "0.1.0",
      "date": "2017-09-26"
    },
    {
      "version": "0.1.1",
      "date": "2017-10-25"
    },
    {
      "version": "0.1.2",
      "date": "2017-11-28"
    },
    {
      "version": "0.1.3",
      "date": "2018-01-30"
    },
    {
      "version": "0.1.4",
      "date": "2018-03-08"
    },
    {
      "version": "0.1.5",
      "date": "2018-04-11"
    },
    {
      "version": "0.2.0",
      "date": "2018-09-18"
    },
    {
      "version": "0.2.1",
      "date": "2018-09-19"
    },
    {
      "version": "0.2.2",
      "date": "2018-11-14"
    },
    {
      "version": "0.2.3",
      "date": "2019-02-07"
    },
    {
      "version": "0.2.4",
      "date": "2019-05-22"
    },
    {
      "version": "0.2.5",
      "date": "2019-11-07"
    },
    {
      "version": "0.2.6",
      "date": "2021-05-28"
    },
    {
      "version": "0.2.7",
      "date": "2022-06-27"
    },
    {
      "version": "0.2.8",
      "date": "2026-01-08"
    }
  ],
  "_exports": [
    "check.overlap",
    "create.augmentation.function",
    "create.propensity.function",
    "fit.subgroup",
    "plotCompare",
    "subgroup.effects",
    "summarize.subgroups",
    "treat.effects",
    "treatment.effects",
    "validate.subgroup",
    "weighted.ksvm"
  ],
  "_datasets": [
    {
      "name": "LaLonde",
      "title": "National Supported Work Study Data",
      "object": "LaLonde",
      "class": [
        "data.frame"
      ],
      "fields": [
        "outcome",
        "treat",
        "age",
        "educ",
        "black",
        "hisp",
        "white",
        "marr",
        "nodegr",
        "log.re75",
        "u75",
        "wts.extrap"
      ],
      "rows": 722,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "check.overlap",
      "title": "Check propensity score overlap",
      "topics": [
        "check.overlap"
      ]
    },
    {
      "page": "create.augmentation.function",
      "title": "Creation of augmentation functions",
      "topics": [
        "create.augmentation.function"
      ]
    },
    {
      "page": "create.propensity.function",
      "title": "Creation of propensity fitting function",
      "topics": [
        "create.propensity.function"
      ]
    },
    {
      "page": "fit.subgroup",
      "title": "Fitting subgroup identification models",
      "topics": [
        "fit.subgroup"
      ]
    },
    {
      "page": "LaLonde",
      "title": "National Supported Work Study Data",
      "topics": [
        "LaLonde"
      ]
    },
    {
      "page": "plot",
      "title": "Plotting results for fitted subgroup identification models",
      "topics": [
        "plot.subgroup_fitted",
        "plot.subgroup_validated"
      ]
    },
    {
      "page": "plotCompare",
      "title": "Plot a comparison results for fitted or validated subgroup identification models",
      "topics": [
        "plotCompare"
      ]
    },
    {
      "page": "predict",
      "title": "Function to predict either benefit scores or treatment recommendations",
      "topics": [
        "predict.subgroup_fitted",
        "predict.wksvm"
      ]
    },
    {
      "page": "print.individual_treatment_effects",
      "title": "Printing individualized treatment effects",
      "topics": [
        "print.individual_treatment_effects"
      ]
    },
    {
      "page": "print",
      "title": "Printing results for fitted subgroup identification models",
      "topics": [
        "print.subgroup_fitted",
        "print.subgroup_summary",
        "print.subgroup_validated"
      ]
    },
    {
      "page": "subgroup.effects",
      "title": "Computes treatment effects within various subgroups",
      "topics": [
        "subgroup.effects"
      ]
    },
    {
      "page": "summarize.subgroups",
      "title": "Summarizing covariates within estimated subgroups",
      "topics": [
        "summarize.subgroups",
        "summarize.subgroups.default",
        "summarize.subgroups.subgroup_fitted"
      ]
    },
    {
      "page": "summary",
      "title": "Summary of results for fitted subgroup identification models",
      "topics": [
        "summary.subgroup_fitted",
        "summary.wksvm"
      ]
    },
    {
      "page": "treatment.effects",
      "title": "Calculation of covariate-conditional treatment effects",
      "topics": [
        "treat.effects",
        "treatment.effects",
        "treatment.effects.default",
        "treatment.effects.subgroup_fitted"
      ]
    },
    {
      "page": "validate.subgroup",
      "title": "Validating fitted subgroup identification models",
      "topics": [
        "validate.subgroup"
      ]
    },
    {
      "page": "weighted.ksvm",
      "title": "Fit weighted kernel svm model.",
      "topics": [
        "weighted.ksvm"
      ]
    }
  ],
  "_readme": "https://github.com/jaredhuling/personalized/raw/HEAD/README.md",
  "_rundeps": [
    "askpass",
    "base64enc",
    "bslib",
    "cachem",
    "cli",
    "codetools",
    "cpp11",
    "crosstalk",
    "curl",
    "data.table",
    "digest",
    "dplyr",
    "evaluate",
    "farver",
    "fastmap",
    "fontawesome",
    "foreach",
    "fs",
    "generics",
    "ggplot2",
    "glmnet",
    "glue",
    "gtable",
    "highr",
    "htmltools",
    "htmlwidgets",
    "httr",
    "isoband",
    "iterators",
    "jquerylib",
    "jsonlite",
    "kernlab",
    "knitr",
    "labeling",
    "later",
    "lattice",
    "lazyeval",
    "lifecycle",
    "magrittr",
    "Matrix",
    "memoise",
    "mgcv",
    "mime",
    "nlme",
    "openssl",
    "otel",
    "pillar",
    "pkgconfig",
    "plotly",
    "promises",
    "purrr",
    "R6",
    "rappdirs",
    "RColorBrewer",
    "Rcpp",
    "RcppEigen",
    "rlang",
    "rmarkdown",
    "S7",
    "sass",
    "scales",
    "shape",
    "stringi",
    "stringr",
    "survival",
    "sys",
    "tibble",
    "tidyr",
    "tidyselect",
    "tinytex",
    "utf8",
    "vctrs",
    "viridisLite",
    "withr",
    "xfun",
    "xgboost",
    "yaml"
  ],
  "_vignettes": [
    {
      "source": "fitting_itrs_with_xgboost.Rmd",
      "filename": "fitting_itrs_with_xgboost.html",
      "title": "Estimation of Flexible ITRs with xgboost",
      "author": "Jared Huling",
      "engine": "knitr::rmarkdown",
      "headings": [
        "First simulate data with complicated conditional average treatment effect/benefit score",
        "Setup",
        "Using xgboost for estimation of ITRs",
        "Comparing performance with linear ITRs"
      ],
      "created": "2022-06-14 19:58:55",
      "modified": "2022-09-02 15:11:23",
      "commits": 5
    },
    {
      "source": "multicategory_treatments_with_personalized.Rmd",
      "filename": "multicategory_treatments_with_personalized.html",
      "title": "Multi-category Treatments with personalized",
      "author": "Jared Huling",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Example with multi-category treatments",
        "More details on propensity scores for multi-category treatments"
      ],
      "created": "2019-09-28 18:11:13",
      "modified": "2022-06-22 14:07:07",
      "commits": 6
    },
    {
      "source": "usage_of_the_personalized_package.Rmd",
      "filename": "usage_of_the_personalized_package.html",
      "title": "Usage of the Personalized Package",
      "author": "Jared Huling",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Introduction to personalized",
        "Choice of $M$ function",
        "Choice of $f$",
        "Variable Selection",
        "Extension to multi-category treatments",
        "Quick Usage Reference",
        "Creating and Checking Propensity Score Model",
        "Fitting Subgroup Identification Models",
        "Evaluating Treatment Effects within Estimated Subgroups",
        "User Guide",
        "Overview",
        "Creating and Checking a propensity Score Model",
        "Observational Studies",
        "Randomized Controlled Trials",
        "Explanation of Major Function Arguments",
        "x",
        "y",
        "trt",
        "propensity.func",
        "loss",
        "method",
        "larger.outcome.better",
        "cutpoint",
        "retcall",
        "...",
        "Continuous Outcomes",
        "Binary Outcomes",
        "Count Outcomes",
        "Time-to-event Outcomes",
        "Efficiency Augmentation",
        "Plotting Fitted Models",
        "Comparing Subgroups from a Fitted Model",
        "Validating Subgroup Identification Models",
        "Repeated Training/Test Splitting",
        "Bootstrap Bias Correction",
        "Plotting Validated Models"
      ],
      "created": "2017-05-25 21:21:39",
      "modified": "2022-06-27 01:20:12",
      "commits": 48
    },
    {
      "source": "efficiency_augmentation_personalized.Rmd",
      "filename": "efficiency_augmentation_personalized.html",
      "title": "Utilities for Improving Estimation Efficiency via Augmentation and for Propensity Score Estimation",
      "author": "Jared Huling",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Efficiency augmentation",
        "Propensity score utilities",
        "Augmentation utilities",
        "Comparing performance with augmentation"
      ],
      "created": "2019-11-06 01:36:03",
      "modified": "2022-06-27 01:20:12",
      "commits": 3
    }
  ],
  "_score": 7.874156990098757,
  "_indexed": true,
  "_nocasepkg": "personalized",
  "_universes": [
    "jaredhuling"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.2.8",
      "date": "2026-05-08T08:19:54.000Z",
      "distro": "noble",
      "commit": "da31260c36bc6df72a5f13675dd9b04c4c018839",
      "fileid": "bf0a53e56e3ffddc4439b5b50426cf18a168ff802bd1e43101304d474edeedb5",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/jaredhuling/actions/runs/25544871177"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "0.2.8",
      "date": "2026-05-08T08:20:10.000Z",
      "distro": "noble",
      "commit": "da31260c36bc6df72a5f13675dd9b04c4c018839",
      "fileid": "3d8f1b0ad390d6310ff83bd1bc05ec7c308d0399c0d052cd2461e046a05a9bfc",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/jaredhuling/actions/runs/25544871177"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.2.8",
      "date": "2026-05-08T08:18:57.000Z",
      "commit": "da31260c36bc6df72a5f13675dd9b04c4c018839",
      "fileid": "3097b63560c395c76f2bc4d75c38083259891d04516e59dfe6ae22db13f21312",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/jaredhuling/actions/runs/25544871177"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "0.2.8",
      "date": "2026-05-08T08:19:06.000Z",
      "commit": "da31260c36bc6df72a5f13675dd9b04c4c018839",
      "fileid": "e3ad58b715b51cb719d96649a40fab784e1093f298f4daf66eaa44f54cc348b7",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/jaredhuling/actions/runs/25544871177"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.2.8",
      "date": "2026-05-08T08:20:52.000Z",
      "commit": "da31260c36bc6df72a5f13675dd9b04c4c018839",
      "fileid": "df361ec893d7d55c2c6f25765f9d6b2a8273a704325b13d359edeac3326476bc",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/jaredhuling/actions/runs/25544871177"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.2.8",
      "date": "2026-05-08T08:19:00.000Z",
      "commit": "da31260c36bc6df72a5f13675dd9b04c4c018839",
      "fileid": "1c6b9b30f86420ffe6576c83afa6f85eb096e35ec81f83be9d2b2ea0782590c1",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/jaredhuling/actions/runs/25544871177"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "0.2.8",
      "date": "2026-05-08T08:19:56.000Z",
      "commit": "da31260c36bc6df72a5f13675dd9b04c4c018839",
      "fileid": "2c3d5082d5dd0e5ad24620ca6a3a46ad3df511a4788051c64dcde02ba853b4c8",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/jaredhuling/actions/runs/25544871177"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.2.8",
      "date": "2026-05-22T13:57:46.000Z",
      "commit": "da31260c36bc6df72a5f13675dd9b04c4c018839",
      "fileid": "914670e914563e9ed9369b430ad28141c538c120070a230bf369db03a383876f",
      "status": "success",
      "buildurl": "https://github.com/r-universe/jaredhuling/actions/runs/25544871177"
    }
  ]
}